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Publications of the ITG

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2018


  1. Online Soft-Error Vulnerability Estimation for Memory Arrays and Logic Cores.
    Vijayan, A.; Kiamehr, S.; Ebrahimi, M.; Chakrabarty, K.; Tahoori, M. B.
    2018. IEEE transactions on computer-aided design of integrated circuits and systems, 37 (2), 499–511. doi:10.1109/TCAD.2017.2706558
  2. Exciting new article categories introduced not Clinical and Experimental Metastasis: submit your article now!.
    Haier, J.; Sleeman, J. P.
    2018. Clinical & experimental metastasis, 35 (1-2), 1–2. doi:10.1007/s10585-018-9880-3
  3. Mutations in blind cavefish target the light-regulated circadian clock gene, period 2.
    Ceinos, R. M.; Frigato, E.; Pagano, C.; Fröhlich, N.; Negrini, P.; Cavallari, N.; Vallone, D.; Fuselli, S.; Bertolucci, C.; Foulkes, N. S.
    2018. Scientific reports, 8 (1), Art.Nr.: 8754. doi:10.1038/s41598-018-27080-2
  4. Nanoparticle Probes for Super-Resolution Fluorescence Microscopy.
    Lin, Y.; Nienhaus, K.; Nienhaus, G. U.
    2018. ChemNanoMat, 4 (3), 253–264. doi:10.1002/cnma.201700375
  5. Lanthanide pyrazolecarboxylates for OLEDs and bioimaging.
    Utochnikova, V. V.; Latipov, E. V.; Dalinger, A. I.; Nelyubina, Y. V.; Vashchenko, A. A.; Hoffmann, M.; Kalyakina, A. S.; Vatsadze, S. Z.; Schepers, U.; Bräse, S.; Kuzmina, N. P.
    2018. Journal of luminescence, 202, 38-46. doi:10.1016/j.jlumin.2018.05.022
  6. Investigation of mouse embryonic stem cell pluripotency using a miniaturized platform for high-throughput screenings in 2D or 3D. PhD dissertation.
    Tronser, T.
    2018. Karlsruhe. doi:10.5445/IR/1000083019
  7. Maleimide end-functionalized poly(2-oxazoline)s by the functional initiator route: synthesis and (bio)conjugation.
    Gil Alvaradejo, G.; Glassner, M.; Hoogenboom, R.; Delaittre, G.
    2018. RSC Advances, 8 (17), 9471–9479. doi:10.1039/C8RA00948A
  8. Characterization of Nanoparticle Batch-To-Batch Variability.
    Mülhopt, S.; Diabaté, S.; Dilger, M.; Adelhelm, C.; Anderlohr, C.; Bergfeldt, T.; Gómez de la Torre, J.; Jiang, Y.; Valsami-Jones, E.; Langevin, D.; Lynch, I.; Mahon, E.; Nelissen, I.; Piella, J.; Puntes, V.; Ray, S.; Schneider, R.; Wilkins, T.; Weiss, C.; Paur, H.-R.
    2018. Nanomaterials, 8 (5), Article: 311. doi:10.3390/nano8050311
  9. Click chemistry-mediated biotinylation reveals a function for the protease BACE1 in modulating the neuronal surface glycoproteome [in press].
    Herber, J.; Njavro, J.; Feederle, R.; Schepers, U.; Müller, U.; Bräse, S.; Müller, S.; Lichtenthaler, S. F.
    2018. Molecular & cellular proteomics, mcp.RA118.000608. doi:10.1074/mcp.RA118.000608
  10. Remarkable high efficiency of red emitters using Eu(III) ternary complexes.
    Kalyakina, A. S.; Utochnikova, V. V.; Zimmer, M.; Dietrich, F.; Kaczmarek, A. M.; Van Deun, R.; Vashchenko, A. A.; Goloveshkin, A. S.; Nieger, M.; Gerhards, M.; Schepers, U.; Bräse, S.
    2018. Chemical communications, 54 (41), 5221-5224. doi:10.1039/C8CC02930J
  11. Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms.
    Liu, T.-L.; Upadhyayula, S.; Milkie, D. E.; Singh, V.; Wang, K.; Swinburne, I. A.; Mosaliganti, K. R.; Collins, Z. M.; Hiscock, T. W.; Shea, J.; Kohrman, A. Q.; Medwig, T. N.; Dambournet, D.; Forster, R.; Cunniff, B.; Ruan, Y.; Yashiro, H.; Scholpp, S.; Meyerowitz, E. M.; Hockemeyer, D.; Drubin, D. G.; Martin, B. L.; Matus, D. Q.; Koyama, M.; Megason, S. G.; Kirchhausen, T.; Betzig, E.
    2018. Science, 360 (6386), eaaq1392. doi:10.1126/science.aaq1392
  12. Regulation of p53 by Fam83F “family with sequence similarity 83F”. PhD dissertation.
    Salama, M.
    2018. Karlsruhe. doi:10.5445/IR/1000082518
  13. Micro-patterns on nanocellulose films and paper by photo-induced thiol–yne click coupling: a facile method toward wetting with spatial resolution.
    Guo, J.; Filpponen, I.; Johansson, L.-S.; Heiβler, S.; Li, L.; Levkin, P.; Rojas, O. J.
    2018. Cellulose, 25 (1), 367-375. doi:10.1007/s10570-017-1593-2
  14. Patterned superhydrophobic surfaces to process and characterize biomaterials and 3D cell culture.
    Neto, A. I.; Levkin, P. A.; Mano, J. F.
    2018. Materials Horizons. doi:10.1039/C7MH00877E
  15. Free-standing three-dimensional hollow bacterial cellulose structures with controlled geometry via patterned superhydrophobic-hydrophilic surfaces.
    Laromaine, A.; Tronser, T.; Pni, I.; Parets, S.; Levkin, P. A.; Roig, A.
    2018. Soft matter, 14 (19), 3955-3962. doi:10.1039/C8SM00112J
  16. One-Pot Parallel Synthesis of Lipid Library via Thiolactone Ring Opening and Screening for Gene Delivery.
    Molla, M. R.; Böser, A.; Rana, A.; Schwarz, K.; Levkin, P. A.
    2018. Bioconjugate chemistry, 29 (4), 992-999. doi:10.1021/acs.bioconjchem.8b00007
  17. Droplet Microarrays: From Surface Patterning to High-Throughput Applications.
    Feng, W.; Ueda, E.; Levkin, P. A.
    2018. Advanced materials, 1706111. doi:10.1002/adma.201706111
  18. Bioinspired Strategy for Controlled Polymerization and Photopatterning of Plant Polyphenols.
    Behboodi-Sadabad, F.; Zhang, H.; Trouillet, V.; Welle, A.; Plumeré, N.; Levkin, P. A.
    2018. Chemistry of materials, 30 (6), 1937-1946. doi:10.1021/acs.chemmater.7b04914
  19. Bacterial cellulose promotes long-term stemness of mESC.
    Tronser, T.; Laromaine, A.; Roig, A.; Levkin, P. A.
    2018. ACS applied materials & interfaces, 10 (19), 16260-16269. doi:10.1021/acsami.8b01992
  20. 1,5-Cyclooctadienyl alcohols and ketones generate a new class of COD Pt complexes.
    Wandler, A. E. E.; Koos, M. R. M.; Nieger, M.; Luy, B.; Bräse, S.
    2018. Dalton transactions, 47 (11), 3689–3692. doi:10.1039/C8DT00075A
  21. Alkyl and Aryl Thiol Addition to [1.1.1]Propellane: Scope and Limitations of a Fast Conjugation Reaction.
    Bär, R. M.; Kirschner, S.; Nieger, M.; Bräse, S.
    2018. Chemistry - a European journal, 24 (6), 1373–1382. doi:10.1002/chem.201704105
  22. EmbryoMiner : A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos.
    Schott, B.; Traub, M.; Schlagenhauf, C.; Takamiya, M.; Antritter, T.; Bartschat, A.; Löffler, K.; Blessing, D.; Otte, J. C.; Kobitski, A. Y.; Nienhaus, G. U.; Strähle, U.; Mikut, R.; Stegmaier, J.
    2018. PLoS Computational Biology, 14 (4), e1006128. doi:10.1371/journal.pcbi.1006128
  23. Expression and activity profiling of the steroidogenic enzymes of glucocorticoid biosynthesis and the co-factors in zebrafish.
    Weger, M.; Diotel, N.; Weger, B. D.; Beil, T.; Zaucker, A.; Eachus, H. L.; Oakes, J. A.; do Rego, J. L.; Storbeck, K.-H.; Gut, P.; Strähle, U.; Rastegar, S.; Müller, F.; Krone, N.
    2018. Journal of neuroendocrinology, 30 (4), Art.Nr.: e12586. doi:10.1111/jne.12586
  24. Targeting oncogenic Ras by the Clostridium perfringens toxin TpeL.
    Schorch, B.; Heni, H.; Zahaf, N. I.; Brummer, T.; Mione, M. C.; Schmidt, G.; Papatheodorou, P.; Aktories, K.
    2018. OncoTarget, 9 (23), 16489-16500. doi:10.18632/oncotarget.24740
  25. Emissions from a modern log wood masonry heater and wood pellet boiler : Composition and biological impact on air-liquid interface exposed human lung cancer cells.
    Kanashova, T.; Sippula, O.; Oeder, S.; Streibel, T.; Passig, J.; Czech, H.; Kaoma, T.; Sapcariu, S. C.; Dilger, M.; Paur, H.-R.; Schlager, C.; Mülhopt, S.; Weiss, C.; Schmidt-Weber, C.; Traidl-Hoffmann, C.; Michalke, B.; Krebs, T.; Karg, E.; Jakobi, G.; Scholtes, S.; Schnelle-Kreis, J.; Sklorz, M.; Orasche, J.; Müller, L.; Reda, A.; Rüger, C.; Neumann, A.; Abbaszade, G.; Radischat, C.; Hiller, K.; Grigonyte, J.; Kortelainen, M.; Kuuspalo, K.; Lamberg, H.; Leskinen, J.; Nuutinen, I.; Torvela, T.; Tissari, J.; Jalava, P.; Kasurinen, S.; Uski, O.; Hirvonen, M.-R.; Buters, J.; Dittmar, G.; Jokiniemi, J. K.; Zimmermann, R.
    2018. Journal of Molecular and Clinical Medicine, 1 (1), 23-35. doi:10.31083/j.jmcm.2018.01.004
  26. TGFβ counteracts LYVE-1-mediated induction of lymphangiogenesis by small hyaluronan oligosaccharides.
    Bauer, J.; Rothley, M.; Schmaus, A.; Quagliata, L.; Ehret, M.; Biskup, M.; Orian-Rousseau, V.; Jackson, D. G.; Pettis, R. J.; Harvey, A.; Bräse, S.; Thiele, W.; Sleeman, J. P.
    2018. Journal of molecular medicine, 96 (2), 199-209. doi:10.1007/s00109-017-1615-4
  27. Zebrafish: A Pharmacogenetic Model for Anesthesia.
    Bedell, V.; Buglo, E.; Marcato, D.; Pylatiuk, C.; Mikut, R.; Stegmaier, J.; Scudder, W.; Wray, M.; Züchner, S.; Strähle, U.; Peravali, R.; Dallman, J. E.
    2018. Chemical and Biochemical Approaches for the Study of Anesthetic Function, Part A. Ed.: R. G. Eckenhoff, 189-209, Elsevier. doi:10.1016/bs.mie.2018.02.004
  28. Theoretical and NMR Conformational Studies of β-Proline Oligopeptides With Alternating Chirality of Pyrrolidine Units.
    Mantsyzov, A. B.; Savelyev, O. Y.; Ivantcova, P. M.; Bräse, S.; Kudryavtsev, K. V.; Polshakov, V. I.
    2018. Frontiers in Chemistry, 6, Art.Nr. 91. doi:10.3389/fchem.2018.00091
  29. Air–Liquid Interface In Vitro Models for Respiratory Toxicology Research: Consensus Workshop and Recommendations.
    Lacroix, G.; Koch, W.; Ritter, D.; Gutleb, A. C.; Larsen, S. T.; Loret, T.; Zanetti, F.; Constant, S.; Chortarea, S.; Rothen-Rutishauser, B.; Hiemstra, P. S.; Frejafon, E.; Hubert, P.; Gribaldo, L.; Kearns, P.; Aublant, J.-M.; Diabaté, S.; Weiss, C.; de Groot, A.; Kooter, I.
    2018. Applied In Vitro Toxicology, 4 (2), 1-16. doi:10.1089/aivt.2017.0034
  30. “siRNA traffic lights”: arabino-configured 2′-anchors for fluorescent dyes are key for dual color readout in cell imaging.
    Steinmeyer, J.; Walter, H.-K.; Bichelberger, M. A.; Schneider, V.; Kubař, T.; Rönicke, F.; Olshausen, B.; Nienhaus, K.; Nienhaus, G. U.; Schepers, U.; Elstner, M.; Wagenknecht, H.-A.
    2018. Organic & biomolecular chemistry. doi:10.1039/C8OB00417J
  31. vasQchip : A Novel Microfluidic, Artificial Blood Vessel Scaffold for Vascularized 3D Tissues.
    Kappings, V.; Grün, C.; Ivannikov, D.; Hebeiss, I.; Kattge, S.; Wendland, I.; Rapp, B. E.; Hettel, M.; Deutschmann, O.; Schepers, U.
    2018. Advanced Materials Technologies, 3 (4), Art.Nr. 1700246. doi:10.1002/admt.201700246
  32. Addition of dithi(ol)anylium tetrafluoroborates to α, β-unsaturated ketones.
    Huang, Y.-C.; Nguyen, A.; Gräßle, S.; Vanderheiden, S.; Jung, N.; Bräse, S.
    2018. Beilstein journal of organic chemistry, 14, 515-522. doi:10.3762/bjoc.14.37
  33. A gender specific role of transcriptional co-regulator nTRIP6 in adult muscle fiber type heterogeneity. PhD dissertation.
    Friedrich, R.
    2018. Karlsruhe
  34. The Cdx2 homeobox gene suppresses intestinal tumorigenesis through non-cell-autonomous mechanisms.
    Balbinot, C.; Armant, O.; Elarouci, N.; Marisa, L.; Martin, E.; Clara, E. de; Onea, A.; Deschamps, J.; Beck, F.; Freund, J.-N.; Duluc, I.
    2018. Journal of experimental medicine, 215 (3), 911-926. doi:10.1084/jem.20170934
  35. Relative Reactivity of Benzothiophene-Fused Enediynes in the Bergman Cyclization.
    Lyapunova, A. G.; Danilkina, N. A.; Rumyantsev, A. M.; Khlebnikov, A. F.; Chislov, M. V.; Starova, G. L.; Sambuk, E. V.; Govdi, A. I.; Bräse, S.; Balova, I. A.
    2018. The journal of organic chemistry, 83 (5), 2788-2801. doi:10.1021/acs.joc.7b03258
  36. BASIS : High-performance bioinformatics platform for processing of large-scale mass spectrometry imaging data in chemically augmented histology.
    Veselkov, K.; Sleeman, J.; Claude, E.; Vissers, J. P. C.; Galea, D.; Mroz, A.; Laponogov, I.; Towers, M.; Tonge, R.; Mirnezami, R.; Takats, Z.; Nicholson, J. K.; Langridge, J. I.
    2018. Scientific reports, 8 (1), Art.Nr.: 4053. doi:10.1038/s41598-018-22499-z
  37. Cytoplasmic Transport Machinery of the SPF27 Homologue Num1 in Ustilago maydis.
    Zhou, L.; Obhof, T.; Schneider, K.; Feldbrügge, M.; Nienhaus, G. U.; Kämper, J.
    2018. Scientific reports, 8 (1), Art.Nr. 3611. doi:10.1038/s41598-018-21628-y
  38. Collision Induced Dissociation of Benzylpyridinium-Substituted Porphyrins : Towards a Thermometer Scale for Multiply Charged Ions?.
    Brendle, K.; Kordel, M.; Schneider, E.; Wagner, D.; Bräse, S.; Weis, P.; Kappes, M. M.
    2018. Journal of the American Society for Mass Spectrometry, 29 (2), 382-392. doi:10.1007/s13361-017-1835-4
  39. Thermal cis-to-trans Isomerization of Azobenzene Side Groups in Metal-Organic Frameworks investigated by Localized Surface Plasmon Resonance Spectroscopy [in press].
    Zhou, W.; Grosjean, S.; Bräse, S.; Heinke, L.
    2018. Zeitschrift für physikalische Chemie. doi:10.1515/zpch-2017-1081
  40. A Whole Brain Staining, Embedding, and Clearing Pipeline for Adult Zebrafish to Visualize Cell Proliferation and Morphology in 3-Dimensions.
    Lindsey, B. W.; Douek, A. M.; Loosli, F.; Kaslin, J.
    2018. Frontiers in neuroscience, 11. doi:10.3389/fnins.2017.00750
  41. Welches Tier interessiert die Medizin am meisten?.
    Strähle, U.
    2018. National geographic, (2), 24
  42. Superresolution and pulse-chase imaging reveal the role of vesicle transport in polar growth of fungal cells.
    Zhou, L.; Evangelinos, M.; Wernet, V.; Eckert, A. F.; Ishitsuka, Y.; Fischer, R.; Nienhaus, G. U.; Takeshita, N.
    2018. Science advances, 4 (1), e1701798. doi:10.1126/sciadv.1701798
  43. Loss of zebrafish Smyd1a interferes with myofibrillar integrity without triggering the misfolded myosin response.
    Paone, C.; Rudeck, S.; Etard, C.; Strähle, U.; Rottbauer, W.; Just, S.
    2018. Biochemical and biophysical research communications, 496 (2), 339-345. doi:10.1016/j.bbrc.2018.01.060
  44. Durchblutete Organe auf dem Chip. Entwicklung eines vaskularisierten Organ-on-Chip System.
    Grün, C.; Pfister, R.; Haase, S.; Schepers, U.
    2018. GIT, (2), 2-4
  45. Reporting pH-sensitive drug release via unpaired spin fluorescence silencing.
    Eing, M.; Olshausen, B.; Fairfull-Smith, K. E.; Schepers, U.; Barner-Kowollik, C.; Blinco, J. P.
    2018. Polymer chemistry, 9 (4), 499–505. doi:10.1039/C7PY01942D
  46. Fish-Microarray: A Miniaturized Platform for Single-Embryo High-Throughput Screenings.
    Popova, A. A.; Marcato, D.; Peravali, R.; Wehl, I.; Schepers, U.; Levkin, P. A.
    2018. Advanced functional materials, 28 (3), 1703486. doi:10.1002/adfm.201703486
  47. Microenvironment-induced CD44v6 promotes early disease progression in chronic lymphocytic leukemia.
    Gutjahr, J. C.; Szenes, E.; Tschech, L.; Asslaber, D.; Schlederer, M.; Roos, S.; Yu, X.; Girbl, T.; Sternberg, C.; Egle, A.; Aberger, F.; Alon, R.; Kenner, L.; Greil, R.; Orian-Rousseau, V.; Hartmann, T. N.
    2018. Blood, 131 (12), 1337-1349. doi:10.1182/blood-2017-08-802462
  48. Asymmetric Organocatalytic Synthesis of Bisindoles - Scope and Derivatizations.
    Retich, C.; Bräse, S.
    2018. European journal of organic chemistry, 2018 (1), 60–77. doi:10.1002/ejoc.201701502
  49. The coordination- and photochemistry of copper(I) complexes: variation of N^N ligands from imidazole to tetrazole.
    Bergmann, L.; Braun, C.; Nieger, M.; Bräse, S.
    2018. Dalton transactions, 47 (2), 608–621. doi:10.1039/C7DT03682E
  50. Fully Automated Pipetting Sorting System for Different Morphological Phenotypes of Zebrafish Embryos.
    Breitwieser, H.; Dickmeis, T.; Vogt, M.; Ferg, M.; Pylatiuk, C.
    2018. SLAS TECHNOLOGY: Translating Life Sciences Innovation, 23 (2), 128-133. doi:10.1177/2472630317745780
  51. Differential recruitment of CD44 isoforms by ErbB ligands reveals an involvement of CD44 in breast cancer.
    Morath, I.; Jung, C.; Lévêque, R.; Linfeng, C.; Toillon, R.-A.; Warth, A.; Orian-Rousseau, V.
    2018. Oncogene, 37, 1472-1484. doi:10.1038/s41388-017-0030-1
  52. Triplet emitters versus TADF emitters in OLEDs : A comparative study.
    Bizzarri, C.; Hundemer, F.; Busch, J.; Bräse, S.
    2018. Polyhedron, 140, 51-66. doi:10.1016/j.poly.2017.11.032
  53. Simulation of FRET dyes allows quantitative comparison against experimental data.
    Reinartz, I.; Sinner, C.; Nettels, D.; Stucki-Buchli, B.; Stockmar, F.; Panek, P. T.; Jacob, C. R.; Nienhaus, G. U.; Schuler, B.; Schug, A.
    2018. The journal of chemical physics, 148 (12), 123321. doi:10.1063/1.5010434
  54. A simple route to highly active single-enzyme nanogels.
    Beloqui, A.; Kobitski, A. Y.; Nienhaus, G. U.; Delaittre, G.
    2018. Chemical science. doi:10.1039/C7SC04438K
  55. Regulation of Staphylococcus aureus Infection of Macrophages by CD44, Reactive Oxygen Species, and Acid Sphingomyelinase.
    Li, C.; Wu, Y.; Riehle, A.; Orian-Rousseau, V.; Zhang, Y.; Gulbins, E.; Grassmé, H.
    2018. Antioxidants & redox signaling, 28 (10), 916-934. doi:10.1089/ars.2017.6994
  56. Ultra-fast Suzuki and Heck reactions for the synthesis of styrenes and stilbenes using arenediazonium salts as super-electrophiles.
    Trusova, M. E.; Rodriguez-Zubiri, M.; Kutonova, K. V.; Jung, N.; Bräse, S.; Felpin, F.-X.; Postnikov, P. S.
    2018. Organic chemistry frontiers, 5 (1), 41-45. doi:10.1039/C7QO00750G
  57. The function of endocytosis in Wnt signaling.
    Brunt, L. H.; Scholpp, S.
    2018. Cellular and molecular life sciences, 75 (5), 785–795. doi:10.1007/s00018-017-2654-2